Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
Swit_4293Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein. (220 aa)    
Predicted Functional Partners:
Swit_0891
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein.
  
     0.771
Swit_4322
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein.
  
     0.770
Swit_3023
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein.
  
     0.765
Swit_1674
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein.
 
  
 0.760
Swit_1647
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein.
 
  
 0.749
Swit_1150
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein.
 
  
 0.742
Swit_1565
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein.
 
  
 0.735
Swit_1888
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein.
 
  
 0.729
Swit_1891
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein.
 
  
 0.719
Swit_4294
PFAM: Asp/Glu racemase.
 
     0.611
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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