STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4352PFAM: major facilitator superfamily MFS_1. (379 aa)    
Predicted Functional Partners:
Swit_4354
PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.813
Swit_4353
PFAM: amino acid permease-associated region.
     
 0.784
Swit_4356
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
     
 0.761
Swit_4355
PFAM: aminoglycoside phosphotransferase.
       0.758
Swit_0705
PFAM: major facilitator superfamily MFS_1.
  
     0.746
Swit_4805
Hypothetical protein.
  
     0.735
Swit_4154
PFAM: major facilitator superfamily MFS_1.
  
     0.726
Swit_3411
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR.
  
   
 0.569
Swit_4351
PFAM: short-chain dehydrogenase/reductase SDR; KR.
       0.521
Swit_4617
Hypothetical protein.
  
  
 0.518
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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