STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4354PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (427 aa)    
Predicted Functional Partners:
Swit_4355
PFAM: aminoglycoside phosphotransferase.
     0.950
Swit_4353
PFAM: amino acid permease-associated region.
 
  
 0.832
Swit_4352
PFAM: major facilitator superfamily MFS_1.
 
   
 0.814
Swit_4356
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
       0.762
Swit_1592
PFAM: FAD dependent oxidoreductase.
 
  
 0.615
Swit_3761
PFAM: FAD dependent oxidoreductase.
 
  
 0.601
Swit_4351
PFAM: short-chain dehydrogenase/reductase SDR; KR.
   
 
 0.576
Swit_1724
PFAM: FAD dependent oxidoreductase.
 
  
 0.573
Swit_2498
PFAM: FAD dependent oxidoreductase.
 
  
 0.560
Swit_0939
PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; Belongs to the GcvT family.
 
  
 0.547
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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