Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4400PFAM: protein of unknown function DUF692; Belongs to the UPF0276 family. (278 aa)    
Predicted Functional Partners:
Swit_4401
Hypothetical protein.
 
  
 0.995
Swit_4399
Hypothetical protein.
 
   
 0.881
Swit_4552
PFAM: glycoside hydrolase, family 16; Hemolysin-type calcium-binding region.
   
    0.739
Swit_4829
PFAM: DoxX family protein.
  
  
 0.706
Swit_0588
Hypothetical protein.
   
    0.634
Swit_1237
PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
 
    0.492
Swit_4873
TIGRFAM: YD repeat protein.
  
    0.477
Swit_0164
SMART: AAA ATPase.
   
    0.456
Swit_3694
SMART: AAA ATPase.
   
    0.456
Swit_3670
Hypothetical protein.
  
    0.428
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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