Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4470PFAM: protein of unknown function DUF526. (86 aa)    
Predicted Functional Partners:
Swit_4471
PFAM: Protein of unknown function DUF1790.
 
     0.884
Swit_4468
TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein.
       0.812
Swit_4469
PFAM: TspO/MBR family protein.
       0.812
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.739
Swit_4710
PFAM: protein of unknown function DUF1476.
  
     0.653
Swit_4052
PFAM: uncharacterised conserved protein UCP032146; Belongs to the UPF0262 family.
  
     0.635
Swit_3546
Hypothetical protein.
  
     0.619
Swit_2712
PFAM: ATP12 ATPase.
 
     0.599
Swit_2680
TIGRFAM: Double-strand break repair protein AddB.
  
     0.570
Swit_0002
NifU-like involved in Fe-S cluster formation.
  
     0.564
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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