Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4479Hypothetical protein. (1057 aa)    
Predicted Functional Partners:
Swit_4481
PFAM: uncharacterised conserved protein UCP025560.
 
   
 0.947
Swit_4480
Hypothetical protein.
 
   
 0.943
Swit_4827
PFAM: surface antigen (D15); surface antigen variable number repeat protein.
 
 
 0.887
Swit_3939
PFAM: Sporulation domain protein.
 
     0.767
Swit_4112
Hypothetical protein.
  
     0.761
Swit_0035
Hypothetical protein.
  
     0.757
Swit_0010
Hypothetical protein.
  
     0.749
Swit_4568
PFAM: histidine kinase A domain protein domain protein.
 
    0.743
Swit_0445
Hypothetical protein.
 
     0.725
Swit_0449
PFAM: polysaccharide biosynthesis protein.
 
     0.723
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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