Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_4481PFAM: uncharacterised conserved protein UCP025560. (124 aa)    
Predicted Functional Partners:
Swit_4480
Hypothetical protein.
 
  
 0.973
Swit_4479
Hypothetical protein.
 
   
 0.947
Swit_3939
PFAM: Sporulation domain protein.
 
     0.676
Swit_4476
PFAM: DNA repair protein RadC; Belongs to the UPF0758 family.
       0.638
Swit_2116
Hypothetical protein.
  
     0.629
Swit_4482
Uncharacterized protein; A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex.
 
     0.572
Swit_0677
Conserved hypothetical protein.
  
     0.540
Swit_0604
PFAM: Sporulation domain protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein.
 
     0.526
Swit_3145
Hypothetical protein.
  
     0.511
Swit_0137
PFAM: SapC family protein.
  
    0.504
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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