Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_4496Signal transduction histidine kinase, LytS; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region. (586 aa)    
Predicted Functional Partners:
Swit_4495
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region.
 
 
 0.972
Swit_2974
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region.
 
 
 0.898
Swit_4497
Hypothetical protein.
       0.543
Swit_3222
Response regulator receiver protein; PFAM: LytTr DNA-binding region.
  
 
 0.519
Swit_2540
PFAM: response regulator receiver.
  
  
 0.404
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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