STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4523PFAM: glycosyl transferase, family 2. (336 aa)    
Predicted Functional Partners:
Swit_4524
Hypothetical protein.
 
   
 0.947
Swit_4525
PFAM: glycosyl transferase, family 2.
 
 
 0.799
Swit_4522
PFAM: acyltransferase 3.
       0.783
Swit_4530
PFAM: O-antigen polymerase.
 
  
 0.685
Swit_4526
PFAM: glycosyl transferase, family 2.
 
 
 0.684
Swit_1260
Flagellar motor component-like protein.
  
  
 0.638
Swit_4009
PFAM: glycosyl transferase, group 1; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
 
 0.602
Swit_4023
TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl.
 
   
 0.583
Swit_3230
PFAM: secretion protein HlyD family protein.
  
  
 0.567
Swit_4528
Non-specific protein-tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.567
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.