Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4526PFAM: glycosyl transferase, family 2. (419 aa)    
Predicted Functional Partners:
Swit_4525
PFAM: glycosyl transferase, family 2.
  
     0.765
Swit_4009
PFAM: glycosyl transferase, group 1; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
 
 
 0.704
Swit_4528
Non-specific protein-tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.702
Swit_4527
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein.
 
  
 0.680
Swit_2371
PFAM: sugar transferase.
 
  
 0.626
Swit_3439
PFAM: sugar transferase.
 
  
 0.603
Swit_4813
PFAM: sugar transferase.
 
  
 0.531
Swit_4001
PFAM: glycosyl transferase, family 2.
 
  
0.509
Swit_2671
PFAM: glycosyl transferase, group 1.
 
  
 0.504
Swit_2978
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.502
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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