Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Swit_4533PFAM: glycoside hydrolase, family 16. (306 aa)    
Predicted Functional Partners:
Swit_2576
PFAM: glycosidase, PH1107-related.
  
     0.494
Swit_3183
PFAM: oxidoreductase domain protein.
 
    0.487
Swit_2577
PFAM: glycosyl transferase, group 1.
 
   
 0.460
Swit_1893
PFAM: Xylose isomerase domain protein TIM barrel.
 
    0.417
Swit_1892
PFAM: Xylose isomerase domain protein TIM barrel.
 
    0.416
Swit_1628
PFAM: Xylose isomerase domain protein TIM barrel.
 
    0.403
Swit_4532
PFAM: sugar transferase.
     
 0.403
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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