Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4547Hypothetical protein. (97 aa)    
Predicted Functional Partners:
Swit_4549
Hpr(Ser) kinase/phosphatase.
 
     0.912
Swit_4551
Hypothetical protein.
 
     0.846
Swit_4548
PFAM: asparagine synthase.
 
   
 0.782
Swit_4550
PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.687
Swit_3799
Hypothetical protein.
 
     0.577
Swit_1934
Hypothetical protein.
  
     0.573
Swit_3662
Hypothetical protein.
  
     0.572
Swit_4546
Hypothetical protein.
       0.551
Swit_1111
Hypothetical protein.
  
     0.549
Swit_1804
PFAM: Endonuclease/exonuclease/phosphatase.
  
     0.515
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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