Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_4552PFAM: glycoside hydrolase, family 16; Hemolysin-type calcium-binding region. (686 aa)    
Predicted Functional Partners:
Swit_4400
PFAM: protein of unknown function DUF692; Belongs to the UPF0276 family.
   
    0.739
Swit_0627
Peptidase M10, serralysin-like protein; PFAM: Hemolysin-type calcium-binding region; peptidase M12A, astacin; peptidase M10A and M12B, matrixin and adamalysin; Peptidase M10, serralysin-like; SMART: peptidase, metallopeptidase.
 
  
0.673
Swit_4006
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein.
 
  
 0.672
Swit_4004
PFAM: Hemolysin-type calcium-binding region.
 
  
0.649
Swit_3106
PFAM: Hemolysin-type calcium-binding region.
 
  
0.634
Swit_4070
PFAM: Hemolysin-type calcium-binding region.
 
  
0.632
Swit_4007
TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.612
Swit_2375
Hypothetical protein.
  
 
 0.590
Swit_2751
PFAM: glycosyl transferase, family 2; polysaccharide deacetylase; chitin synthase; SMART: chitinase II.
  
  
 0.587
Swit_4009
PFAM: glycosyl transferase, group 1; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
 
 0.583
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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