Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_4557Transcriptional regulator, AraC family; PFAM: Cupin 2, conserved barrel domain protein; SMART: helix-turn-helix- domain containing protein, AraC type. (274 aa)    
Predicted Functional Partners:
Swit_4635
Transcriptional regulator, GntR family; TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein.
  
  
 0.627
Swit_4556
Methyltransferase type 11; PFAM: putative RNA methylase; Cyclopropane-fatty-acyl-phospholipid synthase; UbiE/COQ5 methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12.
     
 0.578
Swit_1266
TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; Belongs to the flagella basal body rod proteins family.
   
   0.513
Swit_1540
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
 
 
 0.508
Swit_0733
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
 
 
 0.501
Swit_4177
PFAM: helix-turn-helix- domain containing protein, AraC type.
 
 
 0.495
Swit_2225
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
 
 
 0.494
Swit_0934
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
 
 
 0.480
Swit_1585
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
 
 
 0.477
Swit_0205
PFAM: Cupin 2, conserved barrel domain protein.
 
 
 0.467
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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