Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4589PFAM: peptidase S41. (309 aa)    
Predicted Functional Partners:
Swit_4590
Hypothetical protein.
       0.781
Swit_4591
Hypothetical protein.
       0.758
Swit_4588
Hypothetical protein.
     
 0.693
Swit_4592
Hypothetical protein.
       0.508
Swit_0096
PFAM: NLP/P60 protein.
   
 
 0.497
Swit_2546
PFAM: peptidase M23B.
  
  
 0.497
Swit_3236
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
 
 
 
 0.469
Swit_2375
Hypothetical protein.
  
 
 0.459
Swit_4475
Hypothetical protein.
  
 
 0.459
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.437
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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