STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4597Isoquinoline 1-oxidoreductase; PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding. (768 aa)    
Predicted Functional Partners:
Swit_3977
PFAM: ferredoxin; [2Fe-2S]-binding domain protein.
 
 0.949
Swit_3868
PFAM: ferredoxin; [2Fe-2S]-binding domain protein.
 
 0.941
Swit_0834
PFAM: ferredoxin; [2Fe-2S]-binding domain protein.
 
 0.911
Swit_0499
PFAM: ferredoxin; [2Fe-2S]-binding domain protein.
 
 0.907
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
       0.850
Swit_0122
PFAM: protein of unknown function DUF182.
 
  
 0.819
Swit_0498
PFAM: molybdopterin dehydrogenase, FAD-binding.
 
 
 0.803
Swit_0842
PFAM: molybdopterin dehydrogenase, FAD-binding.
 
 
 0.793
Swit_4599
TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR.
       0.746
Swit_0123
Uncharacterized MobA-like protein.
 
   
 0.730
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.