Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_4601PFAM: Abortive infection protein. (295 aa)    
Predicted Functional Partners:
Swit_4600
Uncharacterized protein; Related to arylsulfate sulfotransferase.
       0.572
Swit_3707
PFAM: ABC-2 type transporter.
  
  
 0.528
Swit_3708
PFAM: ABC-2 type transporter.
  
  
 0.528
Swit_4581
PFAM: ABC-2 type transporter.
  
  
 0.528
Swit_4599
TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR.
     
 0.512
Swit_3157
PFAM: CBS domain containing protein; Chloride channel, core.
       0.443
Swit_0077
PFAM: nitroreductase.
  
  
 0.427
Swit_1036
PFAM: nitroreductase.
  
  
 0.427
Swit_1973
PFAM: nitroreductase.
  
  
 0.427
Swit_2381
PFAM: nitroreductase.
  
  
 0.427
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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