Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_4614Nitric oxide reductase large subunit-like protein. (756 aa)    
Predicted Functional Partners:
Swit_1793
PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3.
 
  
 0.965
Swit_0690
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein.
  
 
 0.762
Swit_1798
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 
 0.735
Swit_2331
Hydrogenobyrinic acid a,c-diamide cobaltochelatase; TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities, AAA_5.
  
  
 0.710
Swit_1434
Nitric oxide dioxygenase; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; MOSC domain containing protein; Oxidoreductase FAD-binding domain protein.
  
  
 0.681
Swit_1789
TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074.
     
 0.673
Swit_4366
PFAM: cytochrome c, class I.
 
 
 0.640
Swit_0721
PFAM: Pyrrolo-quinoline quinone.
  
 
 0.633
Swit_2227
PFAM: Pyrrolo-quinoline quinone.
  
 
 0.633
Swit_4160
PFAM: Pyrrolo-quinoline quinone; cytochrome c, class I.
  
 
 0.633
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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