STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4620PFAM: major facilitator superfamily MFS_1. (387 aa)    
Predicted Functional Partners:
Swit_0705
PFAM: major facilitator superfamily MFS_1.
  
     0.757
Swit_4805
Hypothetical protein.
  
     0.742
Swit_4154
PFAM: major facilitator superfamily MFS_1.
  
     0.630
Swit_4618
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
     0.583
Swit_4619
Hypothetical protein.
       0.545
Swit_4621
PFAM: Rieske [2Fe-2S] domain protein.
       0.542
Swit_4622
Hypothetical protein.
       0.542
Swit_4623
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
     
 0.435
Swit_4617
Hypothetical protein.
 
    0.419
Swit_4239
PFAM: regulatory protein, LuxR.
  
     0.403
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.