Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4622Hypothetical protein. (136 aa)    
Predicted Functional Partners:
Swit_4621
PFAM: Rieske [2Fe-2S] domain protein.
       0.773
Swit_4623
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
       0.578
Swit_4620
PFAM: major facilitator superfamily MFS_1.
       0.542
Swit_2570
PFAM: Glutathione S-transferase, N-terminal domain.
  
     0.516
Swit_4480
Hypothetical protein.
  
     0.471
Swit_3459
Hypothetical protein.
 
     0.467
Swit_1856
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein.
 
     0.430
Swit_3458
PFAM: lipolytic enzyme, G-D-S-L family; protein of unknown function DUF459.
  
     0.422
Swit_1733
Metal-dependent hydrolase-like protein.
  
     0.413
Swit_4156
Alkanal monooxygenase (FMN-linked); PFAM: luciferase family protein.
  
     0.411
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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