Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_4741PFAM: Peptidoglycan-binding LysM. (394 aa)    
Predicted Functional Partners:
Swit_4740
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; CHASE2 domain protein.
 
   
 0.955
Swit_4742
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein.
 
   
 0.915
Swit_3190
PFAM: Polypeptide-transport-associated domain protein, ShlB-type.
 
     0.629
Swit_3176
Hypothetical protein.
 
     0.594
Swit_3192
PFAM: Tetratricopeptide TPR_2 repeat protein.
 
     0.547
Swit_0226
Hypothetical protein.
  
     0.495
Swit_2339
Hypothetical protein.
  
     0.481
Swit_4654
PFAM: peptidase M48, Ste24p.
 
    0.473
Swit_0588
Hypothetical protein.
  
     0.460
Swit_1514
Hypothetical protein.
  
     0.454
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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