Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_4749PFAM: Transglycosylase-associated protein. (82 aa)    
Predicted Functional Partners:
Swit_4750
PFAM: protein of unknown function DUF1153.
       0.697
Swit_4748
Hypothetical protein.
       0.515
Swit_2707
Hypothetical protein.
  
     0.468
Swit_2679
PFAM: protein of unknown function DUF1508.
  
  
 0.447
Swit_0784
Conserved hypothetical protein.
   
    0.428
Swit_4573
Conserved hypothetical protein.
   
    0.428
Swit_4793
PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472.
     
 0.423
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.406
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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