Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4750PFAM: protein of unknown function DUF1153. (99 aa)    
Predicted Functional Partners:
Swit_0575
Uncharacterized protein.
  
     0.756
Swit_0441
Hypothetical protein.
  
     0.733
Swit_4404
Uncharacterized protein.
  
     0.710
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.702
Swit_4773
PFAM: uncharacterised conserved protein UCP033924.
  
     0.701
Swit_4749
PFAM: Transglycosylase-associated protein.
       0.697
Swit_2905
PFAM: OstA family protein.
  
     0.694
Swit_3147
Uncharacterized protein.
  
     0.694
Swit_3584
Hypothetical protein.
  
     0.684
Swit_3881
PFAM: protein of unknown function DUF983.
  
     0.677
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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