STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4760PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein. (292 aa)    
Predicted Functional Partners:
Swit_4759
PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407.
 
  
 0.976
Swit_4758
PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein.
 
    
0.850
Swit_0519
PFAM: protein of unknown function DUF404; protein of unknown function DUF407.
 
  
 0.840
Swit_0520
PFAM: protein of unknown function DUF403.
 
  
 0.830
Swit_1405
PFAM: 20S proteasome, A and B subunits.
 
    0.629
Swit_4765
Uncharacterized protein.
 
     0.587
Swit_4767
PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein.
     
 0.553
Swit_4757
PFAM: Lysine exporter protein (LYSE/YGGA).
  
    0.542
Swit_3982
TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain; DNA polymerase LigD, polymerase domain; DNA polymerase LigD, ligase region; PFAM: DNA primase, small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase.
       0.529
Swit_4768
PFAM: ribonuclease BN.
       0.529
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.