Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_4775Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR. (164 aa)    
Predicted Functional Partners:
Swit_4774
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
     
 0.783
Swit_3392
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
  
     0.648
Swit_3866
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
  
     0.604
Swit_4776
PFAM: sodium:neurotransmitter symporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
       0.578
Swit_4054
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
  
     0.560
Swit_4315
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
  
     0.560
Swit_3268
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
  
     0.478
Swit_0776
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
 
  
 0.466
Swit_4777
PFAM: aminotransferase, class V; aminotransferase, class I and II.
       0.443
Swit_3058
TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain.
 
   
 0.438
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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