Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_4777PFAM: aminotransferase, class V; aminotransferase, class I and II. (391 aa)    
Predicted Functional Partners:
Swit_0002
NifU-like involved in Fe-S cluster formation.
  
 
 0.939
Swit_2917
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.906
Swit_2918
Iron-regulated ABC transporter membrane component SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein.
 
 
 0.865
Swit_2916
PFAM: SufBD protein.
 
 
 0.854
Swit_2944
PFAM: Fe-S metabolism associated SufE.
  
 
 0.794
Swit_4776
PFAM: sodium:neurotransmitter symporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
  
  
 0.666
Swit_2914
TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59.
 
  
 0.567
Swit_4775
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
       0.443
Swit_2913
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
  
 
 0.438
Swit_4774
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
     
 0.430
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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