STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4783Hypothetical protein. (449 aa)    
Predicted Functional Partners:
Swit_1305
PFAM: polysaccharide biosynthesis protein.
  
     0.705
Swit_3919
PFAM: PepSY-associated TM helix domain protein.
  
     0.662
Swit_0916
PFAM: peptidase M20; peptidase dimerisation domain protein.
 
 
 0.584
Swit_2733
Hypothetical protein.
  
     0.563
Swit_1817
PFAM: Erythromycin esterase.
 
    0.557
Swit_4873
TIGRFAM: YD repeat protein.
  
     0.557
Swit_1821
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
     0.541
Swit_4612
PFAM: beta-lactamase.
 
   
 0.514
Swit_4784
PFAM: ferredoxin-dependent glutamate synthase; Belongs to the glutamate synthase family.
     
 0.502
Swit_1818
PFAM: beta-lactamase.
 
   
 0.479
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.