Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
Swit_4783Hypothetical protein. (449 aa)    
Predicted Functional Partners:
Swit_1305
PFAM: polysaccharide biosynthesis protein.
  
     0.705
Swit_3919
PFAM: PepSY-associated TM helix domain protein.
  
     0.662
Swit_0916
PFAM: peptidase M20; peptidase dimerisation domain protein.
 
 
 0.594
Swit_2733
Hypothetical protein.
  
     0.563
Swit_1817
PFAM: Erythromycin esterase.
  
  
 0.562
Swit_4873
TIGRFAM: YD repeat protein.
  
     0.557
Swit_1821
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
     0.541
Swit_1479
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
  
 0.516
Swit_2821
PFAM: Ankyrin.
  
 0.505
Swit_3098
PFAM: Ankyrin.
  
 0.505
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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