STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4793PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472. (872 aa)    
Predicted Functional Partners:
Swit_4801
Type IV secretory pathway VirJ component-like protein.
 
   
 0.918
Swit_4800
PFAM: virulence factor family protein.
 
   
 0.864
Swit_4794
Uncharacterized protein.
       0.850
Swit_2875
PFAM: GtrA family protein.
 
  
 0.638
Swit_4796
PFAM: protein of unknown function DUF1003.
 
     0.630
Swit_4535
PFAM: glycosyl transferase, family 2; glycosyl transferase, group 1.
  
  
 0.599
Swit_4799
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.
 
  
 0.594
Swit_0142
PFAM: phospholipase D/Transphosphatidylase.
  
  
 0.587
Swit_1160
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
     
 0.577
Swit_1916
PFAM: Endonuclease/exonuclease/phosphatase.
 
  
 0.570
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.