Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
Swit_4807PFAM: FAD linked oxidase domain protein. (507 aa)    
Predicted Functional Partners:
Swit_4808
PFAM: Limonene-1,2-epoxide hydrolase.
 
     0.802
Swit_4809
PFAM: cytochrome c, class I.
     
 0.767
Swit_4806
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.757
Swit_4805
Hypothetical protein.
       0.750
Swit_4810
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase.
     
 0.692
Swit_4804
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.606
Swit_1474
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit.
   
 0.511
Swit_2988
NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
 0.511
Swit_1414
PFAM: peptidase M16 domain protein.
 
 
 0.509
Swit_1643
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase.
  
 0.486
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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