Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4808PFAM: Limonene-1,2-epoxide hydrolase. (130 aa)    
Predicted Functional Partners:
Swit_4807
PFAM: FAD linked oxidase domain protein.
 
     0.802
Swit_4809
PFAM: cytochrome c, class I.
       0.773
Swit_4805
Hypothetical protein.
       0.731
Swit_4806
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.731
Swit_4810
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase.
       0.701
Swit_4804
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.592
Swit_4811
Hypothetical protein.
       0.461
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.