Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4815PFAM: O-antigen polymerase. (466 aa)    
Predicted Functional Partners:
Swit_4816
PFAM: polysaccharide export protein.
 
  
 0.959
Swit_4817
Non-specific protein-tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.911
Swit_2371
PFAM: sugar transferase.
 
  
 0.644
Swit_4818
Hypothetical protein.
     
 0.628
Swit_0449
PFAM: polysaccharide biosynthesis protein.
 
  
 0.565
Swit_4009
PFAM: glycosyl transferase, group 1; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
  
 0.553
Swit_3439
PFAM: sugar transferase.
 
  
 0.539
Swit_4031
PFAM: polysaccharide export protein.
 
  
 0.529
Swit_4820
PFAM: O-antigen polymerase.
  
     0.519
Swit_3200
TIGRFAM: lycopene cyclase; lycopene cyclase family protein; PFAM: Lycopene beta and epsilon cyclase.
 
     0.517
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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