STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4820PFAM: O-antigen polymerase. (487 aa)    
Predicted Functional Partners:
Swit_4821
PFAM: glycosyl transferase, group 1.
 
  
 0.942
Swit_3571
Hypothetical protein.
 
  
 0.851
Swit_4031
PFAM: polysaccharide export protein.
 
  
 0.846
Swit_2371
PFAM: sugar transferase.
  
  
 0.842
Swit_4032
TIGRFAM: PEP-CTERM locus polysaccharide chain length determinant; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.819
Swit_4038
PFAM: glycosyl transferase, group 1.
 
  
 0.814
Swit_4037
Hypothetical protein.
 
     0.805
Swit_4028
Hypothetical protein.
 
  
 0.800
Swit_1456
PFAM: glycosyl transferase, group 1.
 
  
 0.797
Swit_1244
PFAM: glycosyl transferase, group 1.
 
  
 0.795
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.