Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4822Hypothetical protein. (474 aa)    
Predicted Functional Partners:
Swit_0144
Hypothetical protein.
  
     0.734
Swit_2757
Hypothetical protein.
  
     0.672
Swit_4837
PFAM: glutathione-dependent formaldehyde-activating, GFA.
  
     0.578
Swit_4821
PFAM: glycosyl transferase, group 1.
       0.557
Swit_4065
PFAM: peptidase C1A, papain.
  
     0.524
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
     0.523
Swit_1292
PFAM: flagellar hook-length control protein.
  
     0.505
Swit_3143
PFAM: Aspartyl/Asparaginyl beta-hydroxylase.
  
     0.496
Swit_0569
Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
     0.475
Swit_1866
PFAM: aryldialkylphosphatase; Belongs to the metallo-dependent hydrolases superfamily. Phosphotriesterase family.
  
     0.457
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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