STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4824Putative phage repressor; PFAM: peptidase S24, S26A and S26B; Belongs to the peptidase S24 family. (216 aa)    
Predicted Functional Partners:
Swit_0855
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein.
 
  
 0.699
Swit_4823
Hypothetical protein.
       0.561
Swit_0010
Hypothetical protein.
  
     0.548
Swit_0035
Hypothetical protein.
  
     0.545
Swit_4828
PFAM: protein of unknown function DUF490.
  
     0.540
Swit_4059
Hypothetical protein.
  
     0.536
Swit_2193
PFAM: phage terminase GpA.
 
  
 0.523
Swit_0600
Hypothetical protein.
  
     0.487
Swit_0884
Hypothetical protein.
  
     0.476
Swit_3894
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
  
   
 0.475
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.