Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4855PFAM: protein of unknown function DUF23. (349 aa)    
Predicted Functional Partners:
Swit_4856
PFAM: GumN family protein.
     
 0.784
Swit_4560
Hypothetical protein.
  
  
 0.708
Swit_2453
PFAM: Capsule polysaccharide biosynthesis protein.
 
    0.590
glyQ
Glycine--tRNA ligase; PFAM: glycyl-tRNA synthetase, alpha subunit.
  
    0.562
Swit_0983
TIGRFAM: methyltransferase FkbM family; PFAM: coagulation factor 5/8 type domain protein; SMART: Fucolectin tachylectin-4 pentraxin-1.
 
     0.539
Swit_2454
PFAM: Capsule polysaccharide biosynthesis protein.
 
   
 0.528
Swit_4559
PFAM: cytochrome P450.
  
 
 0.515
Swit_3494
PFAM: polysaccharide export protein.
 
  
 0.509
Swit_4854
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein.
     
 0.494
Swit_4001
PFAM: glycosyl transferase, family 2.
  
  
 0.491
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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