Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4866Response regulator receiver protein. (422 aa)    
Predicted Functional Partners:
Swit_4869
PFAM: SAF domain.
 
  
 0.988
Swit_4865
PFAM: type II secretion system protein.
 
  
 0.986
Swit_4868
PFAM: type II and III secretion system protein; transport-associated; Belongs to the bacterial secretin family.
 
  
 0.985
Swit_4864
PFAM: type II secretion system protein.
 
  
 0.981
Swit_4870
PFAM: peptidase A24A, prepilin type IV.
 
  
 0.958
Swit_3511
PFAM: type II secretion system protein.
 
  
 0.924
Swit_3515
Flp pilus assembly protein CpaB-like protein.
 
  
 0.908
Swit_3510
PFAM: type II secretion system protein.
 
  
 0.899
Swit_0616
PFAM: Flp/Fap pilin component.
 
  
 0.884
Swit_3514
PFAM: type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.880
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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