Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4867Hypothetical protein. (252 aa)    
Predicted Functional Partners:
Swit_4866
Response regulator receiver protein.
       0.870
Swit_4868
PFAM: type II and III secretion system protein; transport-associated; Belongs to the bacterial secretin family.
     
 0.865
Swit_4869
PFAM: SAF domain.
       0.859
Swit_4864
PFAM: type II secretion system protein.
     
 0.845
Swit_4865
PFAM: type II secretion system protein.
     
 0.845
Swit_4870
PFAM: peptidase A24A, prepilin type IV.
       0.757
Swit_4863
Hypothetical protein.
       0.569
Swit_4871
PFAM: FAD dependent oxidoreductase.
       0.507
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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