Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_4871PFAM: FAD dependent oxidoreductase. (367 aa)    
Predicted Functional Partners:
Swit_1429
PFAM: FAD dependent oxidoreductase.
  
  
 
0.907
Swit_0943
PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glycine cleavage T-protein, C-terminal barrel; Belongs to the GcvT family.
 
 
 0.831
Swit_4870
PFAM: peptidase A24A, prepilin type IV.
       0.625
Swit_4866
Response regulator receiver protein.
 
     0.591
thiG
Thiamine biosynthesis protein ThiS; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
  
 0.578
Swit_0942
PFAM: Sarcosine oxidase, gamma subunit.
 
 
 0.543
Swit_0944
PFAM: Sarcosine oxidase, delta subunit, heterotetrameric.
 
 
 0.534
Swit_4868
PFAM: type II and III secretion system protein; transport-associated; Belongs to the bacterial secretin family.
       0.514
Swit_4869
PFAM: SAF domain.
       0.514
Swit_2745
ABC-type uncharacterized transport system auxiliary component-like protein.
  
     0.511
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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