Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4873TIGRFAM: YD repeat protein. (1405 aa)    
Predicted Functional Partners:
Swit_4872
Hypothetical protein.
       0.639
Swit_2371
PFAM: sugar transferase.
   
    0.597
Swit_4783
Hypothetical protein.
  
     0.557
Swit_0588
Hypothetical protein.
 
  
 0.516
Swit_4400
PFAM: protein of unknown function DUF692; Belongs to the UPF0276 family.
  
    0.477
Swit_1382
Hypothetical protein.
 
  
 0.437
Swit_1732
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
  
     0.437
Swit_1162
PFAM: alpha-2-macroglobulin domain protein.
 
    0.427
Swit_0605
PFAM: Sel1 domain protein repeat-containing protein; Sporulation domain protein.
 
  
 0.424
Swit_3205
PFAM: GCN5-related N-acetyltransferase.
 
    0.417
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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