Swoo_0002 protein (Shewanella woodyi) - STRING interaction network

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Swoo_0002

DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (366 aa)

Predicted Functional Partners:

Swoo_1983

0.996

Swoo_1793

0.995

Swoo_3266

0.995

dnaQ

0.993

Swoo_3704

0.993

polA

0.986

dnaA

0.983

Swoo_1060

0.981

Swoo_2164

0.977

Swoo_2834

0.963

Your Current Organism:

Shewanella woodyi

NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Swoo_0002	Swoo_1060	Swoo_0002	Swoo_1060	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	PFAM: DNA polymerase III chi subunit HolC; KEGG: sse:Ssed_1009 DNA polymerase III chi subunit, HolC.	0.981
Swoo_0002	Swoo_1793	Swoo_0002	Swoo_1793	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	DNA polymerase III, subunits gamma and tau; KEGG: sse:Ssed_2852 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.	0.995
Swoo_0002	Swoo_1983	Swoo_0002	Swoo_1983	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: sse:Ssed_2647 DNA-directed DNA polymerase.	0.996
Swoo_0002	Swoo_2164	Swoo_0002	Swoo_2164	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; KEGG: sse:Ssed_2441 chromosomal replication initiator, DnaA; Belongs to the DnaA family.	0.977
Swoo_0002	Swoo_2834	Swoo_0002	Swoo_2834	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: slo:Shew_2368 exonuclease, RNase T and DNA polymerase III.	0.963
Swoo_0002	Swoo_3266	Swoo_0002	Swoo_3266	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	DNA polymerase III, alpha subunit; KEGG: sse:Ssed_3146 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein.	0.995
Swoo_0002	Swoo_3704	Swoo_0002	Swoo_3704	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	DNA polymerase III, delta subunit; KEGG: sse:Ssed_3481 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta.	0.993
Swoo_0002	dnaA	Swoo_0002	Swoo_0001	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.	0.983
Swoo_0002	dnaQ	Swoo_0002	Swoo_2607	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	0.993
Swoo_0002	polA	Swoo_0002	Swoo_0060	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.986
Swoo_1060	Swoo_0002	Swoo_1060	Swoo_0002	PFAM: DNA polymerase III chi subunit HolC; KEGG: sse:Ssed_1009 DNA polymerase III chi subunit, HolC.	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.981
Swoo_1060	Swoo_1793	Swoo_1060	Swoo_1793	PFAM: DNA polymerase III chi subunit HolC; KEGG: sse:Ssed_1009 DNA polymerase III chi subunit, HolC.	DNA polymerase III, subunits gamma and tau; KEGG: sse:Ssed_2852 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.	0.991
Swoo_1060	Swoo_1983	Swoo_1060	Swoo_1983	PFAM: DNA polymerase III chi subunit HolC; KEGG: sse:Ssed_1009 DNA polymerase III chi subunit, HolC.	TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: sse:Ssed_2647 DNA-directed DNA polymerase.	0.993
Swoo_1060	Swoo_2834	Swoo_1060	Swoo_2834	PFAM: DNA polymerase III chi subunit HolC; KEGG: sse:Ssed_1009 DNA polymerase III chi subunit, HolC.	PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: slo:Shew_2368 exonuclease, RNase T and DNA polymerase III.	0.919
Swoo_1060	Swoo_3266	Swoo_1060	Swoo_3266	PFAM: DNA polymerase III chi subunit HolC; KEGG: sse:Ssed_1009 DNA polymerase III chi subunit, HolC.	DNA polymerase III, alpha subunit; KEGG: sse:Ssed_3146 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein.	0.989
Swoo_1060	Swoo_3704	Swoo_1060	Swoo_3704	PFAM: DNA polymerase III chi subunit HolC; KEGG: sse:Ssed_1009 DNA polymerase III chi subunit, HolC.	DNA polymerase III, delta subunit; KEGG: sse:Ssed_3481 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta.	0.994
Swoo_1060	dnaQ	Swoo_1060	Swoo_2607	PFAM: DNA polymerase III chi subunit HolC; KEGG: sse:Ssed_1009 DNA polymerase III chi subunit, HolC.	DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	0.947
Swoo_1060	polA	Swoo_1060	Swoo_0060	PFAM: DNA polymerase III chi subunit HolC; KEGG: sse:Ssed_1009 DNA polymerase III chi subunit, HolC.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.464
Swoo_1793	Swoo_0002	Swoo_1793	Swoo_0002	DNA polymerase III, subunits gamma and tau; KEGG: sse:Ssed_2852 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.995
Swoo_1793	Swoo_1060	Swoo_1793	Swoo_1060	DNA polymerase III, subunits gamma and tau; KEGG: sse:Ssed_2852 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.	PFAM: DNA polymerase III chi subunit HolC; KEGG: sse:Ssed_1009 DNA polymerase III chi subunit, HolC.	0.991

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