STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0006KEGG: sdn:Sden_0006 hypothetical protein. (270 aa)    
Predicted Functional Partners:
Swoo_0005
PFAM: Di-haem cytochrome c peroxidase; KEGG: sdn:Sden_0005 di-haem cytochrome c peroxidase.
 
     0.940
Swoo_0007
PFAM: Na-Ca exchanger/integrin-beta4; LVIVD repeat protein; KEGG: sdn:Sden_0007 Na-Ca exchanger/integrin-beta4.
 
     0.761
Swoo_3767
PFAM: protease-associated PA domain protein; KEGG: shn:Shewana3_0797 protease-associated PA domain protein.
  
     0.586
Swoo_0540
KEGG: noc:Noc_0114 di-haem cytochrome c peroxidase.
 
     0.449
Swoo_0742
KEGG: slo:Shew_0638 cell surface receptor IPT/TIG domain protein.
  
     0.429
Swoo_3904
PFAM: Di-haem cytochrome c peroxidase; KEGG: cps:CPS_1343 di-haem cytochrome c peroxidase.
 
     0.423
Swoo_3439
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bpd:BURPS668_0035 transcriptional regulator, MerR family.
  
     0.411
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.