STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0028KEGG: hch:HCH_00711 hypothetical protein. (236 aa)    
Predicted Functional Partners:
Swoo_4263
PFAM: protein of unknown function DUF1287; KEGG: hch:HCH_06899 hypothetical protein.
  
     0.682
Swoo_0938
PFAM: pentapeptide repeat protein; Ion transport 2 domain protein; KEGG: sse:Ssed_0839 ion transport 2 domain protein.
  
     0.583
Swoo_0145
KEGG: sse:Ssed_0165 hypothetical protein.
  
     0.553
Swoo_0027
KEGG: sse:Ssed_0029 protoporphyrinogen oxidase.
       0.539
Swoo_3899
KEGG: sde:Sde_3050 hypothetical protein.
  
     0.530
Swoo_3147
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: hch:HCH_03913 chorismate mutase, putative.
  
     0.470
Swoo_1012
Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.466
Swoo_0764
PFAM: Ankyrin; KEGG: hch:HCH_04005 FOG: ankyrin repeat.
 
  0.455
Swoo_2503
KEGG: hch:HCH_06118 hypothetical protein.
 
     0.426
Swoo_2229
KEGG: sse:Ssed_2356 membrane protein-like protein.
  
     0.416
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.