STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smgPFAM: protein of unknown function DUF494; KEGG: sse:Ssed_0038 protein of unknown function DUF494; Belongs to the Smg family. (157 aa)    
Predicted Functional Partners:
Swoo_0040
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: sse:Ssed_0037 DNA protecting protein DprA.
     
 0.805
zapD
Protein of unknown function DUF1342; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.
  
     0.718
Swoo_0464
PFAM: protein of unknown function DUF526; KEGG: sse:Ssed_4151 protein of unknown function DUF526.
  
     0.642
Swoo_0039
PFAM: Peptidoglycan-binding LysM; KEGG: sse:Ssed_0036 peptidoglycan-binding LysM.
 
     0.626
Swoo_3701
PFAM: protein of unknown function DUF1451; KEGG: sse:Ssed_3478 protein of unknown function DUF1451.
  
     0.597
ftsL
Cell division protein FtsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.577
Swoo_4400
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
  
     0.522
Swoo_4397
KEGG: sse:Ssed_0563 hypothetical protein.
  
     0.489
Swoo_2732
TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; KEGG: spl:Spea_2565 Tol-Pal system TolA.
  
     0.482
Swoo_2176
PFAM: amino acid-binding ACT domain protein; KEGG: sse:Ssed_2431 amino acid-binding ACT domain protein.
  
    0.472
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.