Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0066PFAM: regulatory protein TetR; KEGG: sse:Ssed_0102 transcriptional regulator, TetR family. (215 aa)    
Predicted Functional Partners:
Swoo_0672
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: sse:Ssed_3863 glucose-methanol-choline oxidoreductase.
 
  
 0.579
Swoo_0671
KEGG: sse:Ssed_3864 hypothetical protein.
  
     0.569
Swoo_3543
KEGG: sse:Ssed_3372 alpha/beta hydrolase fold.
  
     0.538
Swoo_3449
PFAM: Peptidase M9A collagenase domain protein; KEGG: sse:Ssed_3300 microbial collagenase.
  
     0.506
Swoo_3639
KEGG: sse:Ssed_3438 hypothetical protein.
  
   
 0.503
Swoo_0042
PFAM: Peptidase M9A collagenase domain protein; KEGG: sse:Ssed_0039 microbial collagenase.
  
     0.484
tdh
L-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.
     
 0.436
Swoo_2062
KEGG: sse:Ssed_2604 hypothetical protein.
  
     0.429
Swoo_0067
Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
       0.427
Swoo_3176
PFAM: alpha/beta hydrolase fold; KEGG: sdn:Sden_1098 alpha/beta hydrolase fold.
  
     0.424
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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