STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0073PFAM: glycosyl transferase family 2; KEGG: sdn:Sden_0205 glycosyl transferase, family 2. (251 aa)    
Predicted Functional Partners:
Swoo_4485
Transcriptional regulator, CadC; PFAM: TPR repeat-containing protein; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sdn:Sden_3304 transcriptional regulatory protein-like protein.
  
 
 0.841
Swoo_2661
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; SMART: Tetratricopeptide domain protein; KEGG: sfr:Sfri_0530 hypothetical protein.
  
 
 0.735
Swoo_1907
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sfr:Sfri_0071 TPR repeat-containing protein.
  
 
 0.730
Swoo_2664
Putative PAS/PAC sensor protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: PAS domain containing protein; Tetratricopeptide domain protein; KEGG: sfr:Sfri_0071 TPR repeat-containing protein.
  
 
 0.730
Swoo_3032
PFAM: TPR repeat-containing protein; von Willebrand factor type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_1623 tetratricopeptide TPR_2 repeat protein.
  
 
 0.730
Swoo_3806
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sfr:Sfri_0071 TPR repeat-containing protein.
  
 
 0.730
Swoo_1960
KEGG: pin:Ping_3719 sensor histidine kinase with ATPase domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.681
Swoo_0161
PFAM: polysaccharide deacetylase; KEGG: sse:Ssed_0181 polysaccharide deacetylase.
  
  
 0.655
Swoo_0564
PFAM: polysaccharide deacetylase; Carbohydrate-binding family V/XII; KEGG: vha:VIBHAR_03626 hypothetical protein.
  
  
 0.655
Swoo_4312
PFAM: polysaccharide deacetylase; KEGG: btl:BALH_1738 polysaccharide deacetylase.
  
  
 0.655
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.