STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0077KEGG: sse:Ssed_0116 hypothetical protein. (501 aa)    
Predicted Functional Partners:
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.762
Swoo_1651
PFAM: polysaccharide export protein; KEGG: spl:Spea_1395 polysaccharide export protein.
 
   
 0.685
Swoo_1653
PFAM: lipopolysaccharide biosynthesis protein; KEGG: slo:Shew_1400 lipopolysaccharide biosynthesis protein.
 
   
 0.625
Swoo_1323
KEGG: sse:Ssed_1223 hypothetical protein.
  
     0.611
Swoo_0379
KEGG: sse:Ssed_4221 hypothetical protein.
  
     0.584
Swoo_3044
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sse:Ssed_1608 transcriptional regulator, XRE family.
 
     0.568
Swoo_3866
KEGG: sbl:Sbal_0917 hypothetical protein.
  
     0.555
Swoo_4196
KEGG: sse:Ssed_0773 hypothetical protein.
  
    0.519
Swoo_4350
KEGG: sse:Ssed_0603 hypothetical protein.
 
   0.508
Swoo_0521
KEGG: sse:Ssed_4102 hypothetical protein.
  
     0.507
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.