STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0085PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_0122 ABC transporter-related protein. (239 aa)    
Predicted Functional Partners:
Swoo_0096
PFAM: cobalt transport protein; KEGG: sse:Ssed_0133 cobalt transport protein.
  
 
 0.970
Swoo_0086
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_0123 binding-protein-dependent transport systems inner membrane component.
  
  0.967
Swoo_0087
KEGG: sse:Ssed_0124 extracellular solute-binding protein, family 1.
 
  
  0.926
Swoo_0083
Molybdopterin-guanine dinucleotide biosynthesis protein B; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
     
 0.830
mobA
Molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.
  
    0.802
Swoo_4641
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: scl:sce5713 cell division cycle protein 48-related protein; Belongs to the AAA ATPase family.
  
     0.744
Swoo_2802
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1793 putative phosphonate ABC transporter, ATP-binding protein.
  
     0.729
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
  
 0.717
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
       0.696
Swoo_2505
2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: bcl:ABC0680 molecular chaperone HscC.
  
   
 0.675
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.