STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0087KEGG: sse:Ssed_0124 extracellular solute-binding protein, family 1. (270 aa)    
Predicted Functional Partners:
Swoo_0086
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_0123 binding-protein-dependent transport systems inner membrane component.
 
  
 0.985
Swoo_0085
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_0122 ABC transporter-related protein.
 
  
  0.926
fdhD
Formate dehydrogenase subunit FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
     0.790
Swoo_4820
TIGRFAM: DNA binding domain protein, excisionase family; KEGG: sse:Ssed_4428 DNA binding domain, excisionase family.
 
     0.790
Swoo_4815
PFAM: cytoplasmic chaperone TorD family protein; KEGG: sse:Ssed_4423 cytoplasmic chaperone TorD family protein.
 
     0.754
Swoo_4816
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sse:Ssed_4424 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
     0.748
Swoo_4809
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sse:Ssed_4417 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.746
Swoo_4813
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sse:Ssed_4421 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.742
Swoo_0083
Molybdopterin-guanine dinucleotide biosynthesis protein B; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
   
 0.731
Swoo_4811
TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: spl:Spea_4135 formate dehydrogenase, gamma subunit.
 
     0.726
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.