Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Swoo_0094PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spl:Spea_4088 TonB-dependent receptor. (649 aa)    
Predicted Functional Partners:
Swoo_0095
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_0132 ABC transporter related.
       0.773
Swoo_0096
PFAM: cobalt transport protein; KEGG: sse:Ssed_0133 cobalt transport protein.
       0.744
Swoo_0098
KEGG: sse:Ssed_0135 hypothetical protein.
 
     0.728
Swoo_0245
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 
 0.719
Swoo_0230
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3904 TonB-dependent receptor.
  
   
 0.685
Swoo_3075
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
 
 0.674
Swoo_4005
TIGRFAM: TonB family protein; KEGG: spl:Spea_3328 TonB family protein.
   
 
 0.674
Swoo_0097
KEGG: sse:Ssed_0134 hypothetical protein.
       0.672
Swoo_0213
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_0989 TonB-dependent receptor.
  
   
 0.651
Swoo_4030
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_1722 TonB-dependent receptor.
  
   
 0.641
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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