STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0096PFAM: cobalt transport protein; KEGG: sse:Ssed_0133 cobalt transport protein. (221 aa)    
Predicted Functional Partners:
Swoo_0085
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_0122 ABC transporter-related protein.
  
 
 0.970
Swoo_0094
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spl:Spea_4088 TonB-dependent receptor.
       0.744
Swoo_0095
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_0132 ABC transporter related.
       0.743
Swoo_0097
KEGG: sse:Ssed_0134 hypothetical protein.
       0.700
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.676
Swoo_2591
KEGG: sse:Ssed_2014 phosphomethylpyrimidine kinase, thiamine-phosphate diphosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; phosphomethylpyrimidine kinase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1.
  
  
 0.661
Swoo_0098
KEGG: sse:Ssed_0135 hypothetical protein.
       0.537
Swoo_0099
KEGG: sse:Ssed_0136 hypothetical protein.
       0.516
Swoo_2540
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sse:Ssed_2069 transcriptional regulator, RpiR family.
  
    0.452
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
  
  
 0.440
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.